Merge branch 'master' of https://depend.csd.auth.gr:8443/nestorid/requirement-tool

reqtool/ReqmanAngular11/src/app/components/boilerplate-details/boilerplate-details.component.html

@@ -238,14 +238,14 @@
                           <ul> <button mat-button [matMenuTriggerFor]="menu"
                               [matMenuTriggerData]="{section: section.Name ,class: item.Class, subclass: sub.SubClass_name, subsubclass:subsub.SubSubClass_name , subsubsubclass: subsubsub.SubSubClass_name, subsubsubsubclass: subsubsubsub.SubSubClass_name}"
                               #menuTrigger>
-                              <h5>Instances</h5>
+                              <h5>AAA-Instances</h5>
                             </button>
                             <div
                               *ngFor="let subsubsubsubinstansub of subsubsubsub.SubInstanceOfSubclass| filter:searchText">
                               <li>
                                 <mat-expansion-panel hideToggle>
                                   <mat-expansion-panel-header>
-                                    <mat-panel-title class="d-flex justify-content-between">
+                                    <mat-panel-title class="d-flex justify-content-between" >
                                       <span div fxLayout="row"
                                         fxLayoutAlign="space-around center">{{subsubsubsubinstansub.Instance}}</span>
                                       <div style="margin-bottom: 4px;">

reqtool/ReqmanAngular11/src/app/components/boilerplate-details/boilerplate-details.component.scss

@@ -29,3 +29,8 @@
     height:100%;
     overflow:auto;  
   }
+
+  .d-flex{
+    overflow-x: auto; 
+    white-space: nowrap;
+  }
\ No newline at end of file

reqtool/ReqmanAngular11/src/app/components/boilerplate-list/boilerplate-list.component.html

@@ -69,22 +69,26 @@
     </ng-container>
 
     <!-- Name Column -->
-    <ng-container matColumnDef="prefix_data">
+    <ng-container matColumnDef="prefix_data" >
       <th mat-header-cell *matHeaderCellDef> Prefix </th>
-      <td mat-cell *matCellDef="let element">{{element.prefix_data}} </td>
+      <td mat-cell *matCellDef="let element" [matTooltip]="element.prefix_data && element.prefix_data.length > 70 ? element.prefix_data : null" 
+        matTooltipClass="custom-tooltip" matTooltipPosition="above">{{element.prefix_data && element.prefix_data.length > 70 ? element.prefix_data.substr(0, 70)  +'...': element.prefix_data}}</td>
     </ng-container>
     <!-- Name Column -->
     <ng-container matColumnDef="title_data">
       <th mat-header-cell *matHeaderCellDef> Title </th>
-      <td mat-cell *matCellDef="let element" matTooltip={{get_metrics(element.title_data)}}> {{element.title_data}}
+      <td mat-cell *matCellDef="let element" [matTooltip]="get_metrics(element.title_data).length > 0 ? get_metrics(element.title_data) : null"> {{element.title_data}}
         <span *ngIf="get_metrics(element.title_data).length > 0" matBadge={{get_metrics(element.title_data).length}}
           matBadgeColor="warn" matBadgeSize="small" position="above"> &nbsp;&nbsp; </span>
+      <span *ngIf="get_secondary_metrics(element.title_data).length > 0" matBadge={{get_secondary_metrics(element.title_data).length}}
+        matBadgeColor="accent" matBadgeSize="small" position="above"> &nbsp;&nbsp; </span>
       </td>
     </ng-container>
 
     <ng-container matColumnDef="main_data">
       <th mat-header-cell *matHeaderCellDef> Main </th>
-      <td mat-cell *matCellDef="let element"> {{element.main_data}} </td>
+      <td mat-cell *matCellDef="let element" [matTooltip]="element.main_data && element.main_data.length > 70 ? element.main_data : null" 
+        matTooltipClass="custom-tooltip" matTooltipPosition="above">{{element.main_data && element.main_data.length > 70 ? element.main_data.substr(0, 70)  +'...': element.main_data}}</td>
     </ng-container>
 
     <ng-container matColumnDef="suffix_data">
@@ -107,7 +111,9 @@
   <mat-paginator #paginator [pageSizeOptions]="[20, 50]" showFirstLastButtons></mat-paginator>
 </div>
 
+<div *ngIf="!this.spinnerchart">
 <div echarts [options]="chartOption" class="demo-chart"></div>
+</div>
 
 <div class="content">
   <div fxLayout="row wrap">

reqtool/ReqmanAngular11/src/app/components/boilerplate-list/boilerplate-list.component.scss

@@ -25,3 +25,14 @@ table {
 .mat-row:hover .mat-cell {
   border-color: currentColor;
 }
+
+::ng-deep .custom-tooltip {
+  background-color: #333;
+  color: #fff;
+  font-size: 14px;
+  padding: 8px;
+  border-radius: 4px;
+  max-width: 600px !important;
+  white-space: normal;
+  word-wrap: break-word;
+}
\ No newline at end of file

reqtool/ReqmanAngular11/src/app/components/boilerplate-list/boilerplate-list.component.ts

@@ -43,6 +43,8 @@ export class BoilerplateListComponent implements OnInit {
       }
     ],
   };
+
+  spinnerchart=true;
   private readonly notifier: NotifierService;
   boilerplates?: Boilerplate[];
   boilerplatesdata?: BoilerplateData[];
@@ -67,6 +69,8 @@ export class BoilerplateListComponent implements OnInit {
 
 
   list_of_inference_metrics = ["IncompleteRequirement", "AmbiguousRequirement", "InconsistentRequirement", "NoisyRequirement", "OpaqueRequirement", "RedundantRequirement"]
+  list_of_primary_inference_metrics = ["IncompleteRequirement", "AmbiguousRequirement", "InconsistentRequirement", "RedundantRequirement"]
+  list_of_secondary_inference_metrics = ["NoisyRequirement", "OpaqueRequirement"]
 
   @ViewChild(MatPaginator) paginator = this.newdataSource.paginator;
 
@@ -186,12 +190,13 @@ export class BoilerplateListComponent implements OnInit {
             }
           }
           //console.log(final);
+          
           this.chartOption.series = [{
             type: 'pie',
             radius: ['40%', '70%'],
             data: final,
           }]
-
+          this.spinnerchart = false;
         },
         error => {
           console.log(error);
@@ -227,12 +232,42 @@ export class BoilerplateListComponent implements OnInit {
   get_metrics(i: any): any {
     if (this.currentInfer?.inference_data) {
       const obj = JSON.parse(this.currentInfer['inference_data'].replace(/'/g, "\""))
+      var final = []
       if (obj[i]) {
-        return obj[i]
+        for (let j in obj[i]){ 
+          //console.log(obj[i][j])
+          if(this.list_of_primary_inference_metrics.includes(obj[i][j])){
+            final.push(obj[i][j])
+          }
         }
+        //return obj[i]
+      }
+      //final.push({ value: obj[i].length, name: i })
+      return final;
     }
     return 0
   }
+
+  get_secondary_metrics(i: any): any {
+    if (this.currentInfer?.inference_data) {
+      const obj = JSON.parse(this.currentInfer['inference_data'].replace(/'/g, "\""))
+      var final = []
+      if (obj[i]) {
+        for (let j in obj[i]){ 
+          //console.log(obj[i][j])
+          if(this.list_of_secondary_inference_metrics.includes(obj[i][j])){
+            final.push(obj[i][j])
+          }
+        }
+        //return obj[i]
+      }
+      //final.push({ value: obj[i].length, name: i })
+      return final;
+    }
+    return 0
+  }
+
+
   getnumreq(): any {
     return this.boilerplatesdata?.length
   }

reqtool/reqman/api/reqman/apps/reqtool/rest_api/services/inference.py

@@ -285,6 +285,7 @@ def exportboiltottl(ontfile,project, prefix, boilerplate, main, suffix):
         g.serialize(destination=save_path+file_name+'.ttl', format='turtle')
         return (save_path+file_name)
     #print(g.serialize(format="turtle").decode("utf-8"))
+import time
 
 def shacl(ontotlogy_file):
     metrics_dict = {}
@@ -294,21 +295,15 @@ def shacl(ontotlogy_file):
     shutil.copyfile(file1, target)
     final_result = ''
     target1 = target.replace(" ","\ ")
-    for i in range(30):
-        print(i+1, 'Cycle of inferencing')
-        #result = subprocess.check_output(["./reqman/apps/reqtool/rest_api/services/shacl-1.3.2/bin/shaclinfer.sh", "-datafile", target])
+    open('tempOnt.ttl', 'w').close()
+    shutil.copyfile(target1, 'tempOnt.ttl')
+    cmd = ['java', '-jar', 'reqman/apps/reqtool/rest_api/services/inference/teoProjectUbuntu.jar']
     try:
-            result = subprocess.check_output("./reqman/apps/reqtool/rest_api/services/shacl-1.4.2/bin/shaclinfer.sh -datafile "+target1+" | grep -v -e 'WARN  OntDocumentManager' -e 'at org.' -e 'org.apache.' -e '@' ",shell=True, timeout=360)
+        output = subprocess.check_output(cmd)
     except:
         raise APIException("Problem during the Inferencing")
-        if(result==final_result):
-            break
-        final_result=result
-        file_object = open(target, 'a')
-        res = str(result,'utf-8')
-        file_object.write(res.strip())
-        file_object.close()
-    
+    shutil.copyfile('ontology.ttl', target)
+    os.remove('ontology.ttl')
     #need to fiil with all the metrics
     g = Graph()
     gon = Graph()

reqtool/reqman/api/reqman/apps/reqtool/rest_api/views/requirements_views.py

@@ -292,7 +292,7 @@ class InferDetailsAPIView(RetrieveUpdateDestroyAPIView):
             maindata.append(self.getmaindata(id.boilerplate_data_id.id))
             suffixdata.append(self.getsuffixdata(id.boilerplate_data_id.id))
         #try:
-        metrics, onto_file = inference.inferencing(instance['ontology_file'], project_title, boildata, prefixdata, maindata, suffixdata)
+        metrics, onto_file = (inference.inferencing(instance['ontology_file'], project_title, boildata, prefixdata, maindata, suffixdata))
         #except:
         #    raise APIException("Not all instances in the Ontology")
         instance.update(inference_data = metrics, ontology_file=onto_file)

reqtool/reqman/api/reqman/apps/reqtool/rest_api/views/user_views.py

@@ -25,9 +25,17 @@ def signup(request):
         mail = data['email']
         username = data['username']
         password = data['password1']
+        user = User.objects.create_user(email=mail, password=password)
+        send_mail(
+            'Welcome to our site',
+            f'Hi {username},\n\nThanks for signing up for our site!',
+            settings.EMAIL_HOST_USER,
+            [mail],
+            fail_silently=False,
+        )
         send_mail(
             'New register from Requirement tool',
-            ' Username :'+username+'\n Mail:'+mail+' \n Password:'+password,
+            ' Username :'+username+'\n Mail:'+mail+' \n Fullname:'+username+'/n',
             settings.EMAIL_HOST_USER,
             ['nestorid@gapps.auth.gr'],
             fail_silently=False,