New inference proccess 1.4.2

reqtool/ReqmanAngular11/src/app/components/boilerplate-details/boilerplate-details.component.html

@@ -10,11 +10,20 @@
 </nav>
 <mat-grid-list cols="2">
   <div class="first">
-    <div *ngIf="get_metrics(currentboilerplate.title)" style="margin-right: 50px;width: 90%;"
-      class="alert alert-warning" role="alert">
-      <p [innerHTML]="getinferdata()"></p>
+    <div *ngIf="get_metrics(currentboilerplate.title)"
+      style="display:flex; flex-direction: row; align-items: center;margin-bottom: 50px;">
+      <mat-accordion>
+        <mat-expansion-panel *ngFor="let msection of mes_list" class="alert alert-warning" role="alert">
+          <mat-expansion-panel-header>
+            <mat-panel-title [innerHTML]='msection.Description'>
+            </mat-panel-title>
+          </mat-expansion-panel-header>
+          <p [innerHTML]=msection.Title></p>
+          <p [innerHTML]='msection.Info'></p>
+        </mat-expansion-panel>
+      </mat-accordion>
     </div>
-    <div *ngIf="currentboilerplate.id" class="edit-form">
+    <div *ngIf=" currentboilerplate.id" class="edit-form">
       <form ngNativeValidate>
         <div class="form-group" style="display:flex; flex-direction: row; align-items: center">
           <label for="title" style="margin-right: 50px;">Requirement title</label>
@@ -138,7 +147,12 @@
                               {{instan.Instance}}
                             </mat-panel-title>
                           </mat-expansion-panel-header>
-                          <p>{{instan.Comment}}</p>
+                          <div fxLayout="column">
+                            <p fxFlex fxHide.xs>{{instan.Comment}}</p>
+                            <input fxFlex fxHide.xs fxLayoutAlign="start" class="btn btn-warning" type="button"
+                              value="Delete Instance"
+                              (click)="deleteInstance(section.Name , item.Class, '', '', '', '', instan.Instance, instan.Comment)" />
+                          </div>
                         </mat-expansion-panel>
                       </li>
                     </div>
@@ -205,8 +219,14 @@
                                     <mat-panel-title>
                                       {{ subsubsubsubinstansub.Instance}}
                                     </mat-panel-title>
+
                                   </mat-expansion-panel-header>
-                                  <p>{{subsubsubsubinstansub.Comment}}</p>
+                                  <div fxLayout="column">
+                                    <p fxFlex fxHide.xs>{{subsubsubsubinstansub.Comment}}</p>
+                                    <input fxFlex fxHide.xs fxLayoutAlign="start" class="btn btn-warning" type="button"
+                                      value="Delete Instance"
+                                      (click)="deleteInstance(section.Name , item.Class, sub.SubClass_name, subsub.SubSubClass_name , subsubsub.SubSubClass_name, subsubsubsub.SubSubClass_name, subsubsubsubinstansub.Instance, subsubsubsubinstansub.Comment)" />
+                                  </div>
                                 </mat-expansion-panel>
                               </li>
                             </div>
@@ -227,7 +247,12 @@
                                 {{ subsubsubinstansub.Instance}}
                               </mat-panel-title>
                             </mat-expansion-panel-header>
-                            <p>{{subsubsubinstansub.Comment}}</p>
+                            <div fxLayout="column">
+                              <p fxFlex fxHide.xs>{{subsubsubinstansub.Comment}}</p>
+                              <input fxFlex fxHide.xs fxLayoutAlign="start" class="btn btn-warning" type="button"
+                                value="Delete Instance"
+                                (click)="deleteInstance(section.Name , item.Class, sub.SubClass_name, subsub.SubSubClass_name , subsubsub.SubSubClass_name, '', subsubsubinstansub.Instance, subsubsubinstansub.Comment)" />
+                            </div>
                           </mat-expansion-panel>
                         </li>
                       </div>
@@ -248,7 +273,12 @@
                         {{ subsubinstansub.Instance}}
                       </mat-panel-title>
                     </mat-expansion-panel-header>
-                    <p>{{subsubinstansub.Comment}}</p>
+                    <div fxLayout="column">
+                      <p fxFlex fxHide.xs>{{subsubinstansub.Comment}}</p>
+                      <input fxFlex fxHide.xs fxLayoutAlign="start" class="btn btn-warning" type="button"
+                        value="Delete Instance"
+                        (click)="deleteInstance(section.Name , item.Class, sub.SubClass_name, subsub.SubSubClass_name , '', '', subsubinstansub.Instance, subsubinstansub.Comment)" />
+                    </div>
                   </mat-expansion-panel>
                 </li>
               </div>
@@ -270,7 +300,12 @@
                       {{ instansub.Instance}}
                     </mat-panel-title>
                   </mat-expansion-panel-header>
-                  <p>{{instansub.Comment}}</p>
+                  <div fxLayout="column">
+                    <p fxFlex fxHide.xs>{{instansub.Comment}}</p>
+                    <input fxFlex fxHide.xs fxLayoutAlign="start" class="btn btn-warning" type="button"
+                      value="Delete Instance"
+                      (click)="deleteInstance(section.Name , item.Class, sub.SubClass_name, '', '', '', instansub.Instance, instansub.Comment)" />
+                  </div>
                 </mat-expansion-panel>
               </li>
 
@@ -297,7 +332,11 @@
               {{genin.Instance}}
             </mat-panel-title>
           </mat-expansion-panel-header>
-          {{genin.Comment}}
+          <div fxLayout="column">
+            <p fxFlex fxHide.xs> {{genin.Comment}}</p>
+            <input fxFlex fxHide.xs fxLayoutAlign="start" class="btn btn-warning" type="button" value="Delete Instance"
+              (click)="deleteInstance(section.Name , '', '', '' , '', '', genin.Instance, genin.Comment)" />
+          </div>
         </mat-expansion-panel>
       </li>
     </div>

reqtool/ReqmanAngular11/src/app/components/main-details/main-details.component.ts

@@ -135,9 +135,9 @@ export class MainDetailsComponent implements OnInit {
   }
 
   ngOnInit(): void {
+    this.getAllMain(this.route.snapshot.params.id);
     this.getchoices();
     this.getmainchoices(this.route.snapshot.params.gb);
-    this.getAllMain(this.route.snapshot.params.id);
   }
 
   ngDoCheck() {

reqtool/ReqmanAngular11/src/app/services/main.service.ts

@@ -169,4 +169,8 @@ export class MainService {
   setinstances(gb : any, instance: any, comment:any): Observable<any> {
     return this.http.get(`${baseUrl2}${gb}`+`/main/choices/add`+`/${instance}`+`/${comment}/`);
   }
+
+  deleteinstances(gb : any, instance: any, comment:any): Observable<any> {
+    return this.http.get(`${baseUrl2}${gb}`+`/main/choices/delete`+`/${instance}`+`/${comment}/`);
+  }
 }

reqtool/reqman/api/reqman/apps/reqtool/models/main_req.py

@@ -121,21 +121,21 @@ class Main(models.Model):
     boilerplate_of_main = models.ForeignKey('reqtool.Boilerplate', related_name='main_boilerplate', on_delete=models.CASCADE)
     main_owner = models.ForeignKey(User, related_name='main_owner', on_delete=models.CASCADE)
     #Subject
-    sys_fun_inter = models.CharField(max_length=100)
+    sys_fun_inter = models.CharField(max_length=1000)
     #Between Subject - Verb
-    state_item_before_verb = models.CharField(max_length=100, blank=True)
-    statevalue_before_verb = models.CharField(max_length=100, blank=True)
+    state_item_before_verb = models.CharField(max_length=1000, blank=True)
+    statevalue_before_verb = models.CharField(max_length=1000, blank=True)
     #Verb
-    shall = models.CharField(max_length=100)
-    verb = models.CharField(max_length=100)
+    shall = models.CharField(max_length=1000)
+    verb = models.CharField(max_length=1000)
     #Between Verb - Object
-    quantifier = models.CharField(max_length=100, blank=True)
-    numerical = models.CharField(blank=True, null=True, max_length=10) 
-    mumerical_units = models.CharField(max_length=100, blank=True)
+    quantifier = models.CharField(max_length=1000, blank=True)
+    numerical = models.CharField(blank=True, null=True, max_length=1000) 
+    mumerical_units = models.CharField(max_length=1000, blank=True)
     #Οbject
-    flow_function_interface_item_system_state_stateset = models.CharField( max_length=100)
+    flow_function_interface_item_system_state_stateset = models.CharField( max_length=1000)
     #last definitions
-    statevalue_system_connection_stateset = models.CharField(max_length=100, blank=True)
+    statevalue_system_connection_stateset = models.CharField(max_length=1000, blank=True)
     #ID [M1-M16]
     main_choices = models.CharField(max_length=100, blank=True)
 

reqtool/reqman/api/reqman/apps/reqtool/models/requirements.py

@@ -158,7 +158,7 @@ class Boilerplate(models.Model):
     owner = models.ForeignKey(User, related_name='boilerplate', on_delete=models.CASCADE)
     group_of_boilerplate = models.ForeignKey(BoilerplateGroup, related_name='owner_of_boilerplate', on_delete=models.CASCADE)
     created = models.DateTimeField(auto_now_add=True)
-    title = models.CharField(max_length=30, unique=True)
+    title = models.CharField(max_length=300, unique=True)
     has_prefix = models.BooleanField(default=False)
     has_main = models.BooleanField(default=False)
     has_suffix = models.BooleanField(default=False)
@@ -212,18 +212,18 @@ class PrefixGroup(models.Model):
 class Prefix(models.Model):
     prefixgroup = models.ForeignKey(PrefixGroup, related_name='prefix', on_delete=models.CASCADE)
     prefix_boilerplate = models.ForeignKey(Boilerplate, related_name='prefix_boilerplate', on_delete=models.CASCADE)
-    prefix = models.CharField(max_length=100)
+    prefix = models.CharField(max_length=1000)
     #state value constraint
-    system_fun_item = models.CharField(max_length=100)
-    state_or_verb =  models.CharField(max_length=100)
+    system_fun_item = models.CharField(max_length=1000)
+    state_or_verb =  models.CharField(max_length=1000)
     #occuring functionality
-    item_function_flow_statevalue = models.CharField(max_length=100)
+    item_function_flow_statevalue = models.CharField(max_length=1000)
     #state value constraint OR occuring functionality
-    logical_expression =  models.CharField(max_length=100, blank=True)
+    logical_expression =  models.CharField(max_length=1000, blank=True)
     #Logic connectivity Prefix1 (and/or/xor) Prefix2
-    logic_connective = models.CharField(max_length=100, blank=True)
+    logic_connective = models.CharField(max_length=1000, blank=True)
     #Prefix value P1/P2/P3
-    simple_prefix = models.CharField(max_length=100, blank=True)
+    simple_prefix = models.CharField(max_length=1000, blank=True)
 
 
     def __init__(self, *args, **kwargs):
@@ -265,7 +265,7 @@ class BoilerplateData(models.Model):
 class InferenceResults(models.Model):
     owner_infer = models.ForeignKey(User, related_name='owner_infer', on_delete=models.CASCADE)    
     infer_group_of_boilerplate = models.ForeignKey(BoilerplateGroup, related_name='infer_owner_of_boilerplate', on_delete=models.CASCADE)
-    ontology_file = models.CharField(max_length=100, blank=True)
+    ontology_file = models.CharField(max_length=1000, blank=True)
     inference_data = models.CharField(default="", max_length=1000000, blank=True)
 
     def save(self, **kwargs):
@@ -280,7 +280,7 @@ class InferenceResults(models.Model):
 class BoilerplateGroupClassesInstances(models.Model):
     classes_instances_group_of_boilerplate = models.ForeignKey(BoilerplateGroup, related_name='classes_instances_owner_of_boilerplate', on_delete=models.CASCADE)
     classes_instances_owner = models.ForeignKey(User, related_name='classes_instances_owner', on_delete=models.CASCADE)
-    ontology_file = models.CharField(default="", max_length=100, blank=True)
+    ontology_file = models.CharField(default="", max_length=1000, blank=True)
     prefix_choices = JSONField()
     prefix_logcon_choices = JSONField()
     prefix_verb_choices = JSONField()
@@ -306,5 +306,5 @@ class BoilerplateGroupClassesInstances(models.Model):
 class BoilerplateGroupDictionary(models.Model):
     classes_instances_group_of_boilerplate_dic = models.ForeignKey(BoilerplateGroup, related_name='classes_instances_owner_of_boilerplate_dic', on_delete=models.CASCADE)
     classes_instances_owner_dic = models.ForeignKey(User, related_name='classes_instances_owner_dic', on_delete=models.CASCADE)
-    ontology_file_dic = models.CharField(default="", max_length=100, blank=True)
+    ontology_file_dic = models.CharField(default="", max_length=1000, blank=True)
     Dictionary_Data = JSONField()

reqtool/reqman/api/reqman/apps/reqtool/rest_api/services/inference.py

@@ -82,10 +82,10 @@ def exportboiltottl(ontfile,project, prefix, boilerplate, main, suffix):
         g.load('../../Ontologies/'+ontfile, format="turtle")
     else :
         g.load(ontfile, format="turtle")
-    print(ontfile)
+    #print(ontfile)
     #remove the requirements from the RDO-instances
-    previous_req = URIRef("http://delab.csd.auth.gr/ontologies/2018/RDO-instances#")
-    g.remove((previous_req, None, None))
+    #previous_req = URIRef("http://delab.csd.auth.gr/ontologies/2018/RDO-instances#")
+    #g.remove((previous_req, None, None))
     for i in range(len(boilerplate)):
         title = boilerplate[i][0]['title']
         g.add((per_instances + title, RDF.type, rdo + 'Requirement'))
@@ -135,7 +135,6 @@ def exportboiltottl(ontfile,project, prefix, boilerplate, main, suffix):
                     if(main[i][0][j] != ""):
                         instance_file, splitter_1 = getinstancefile(main[i][0][j], g)  
                         if ( splitter_1[0] =='Item' or splitter_1[0] =='Flow' ):
-                            print(main[i][0][j])
                             g.add((per_instances+(title+"_"+ main[i][0]['main_choices']), rbo+"isRelatedToTraversingConcept", URIRef(str(instance_file))+"#"+ str(splitter_1[len(splitter_1) -1])))
                         else :
                             g.add((per_instances+(title+"_"+ main[i][0]['main_choices']), rbo+"isRelatedTo"+splitter_1[0], URIRef(str(instance_file))+"#"+ str(splitter_1[len(splitter_1) -1])))
@@ -253,36 +252,62 @@ def shacl(ontotlogy_file):
     open(target, 'w').close()
     shutil.copyfile(file1, target)
     for i in range(3):
-            print(i+1, 'Cycle of inferencing')
-            result = subprocess.check_output(["./reqman/apps/reqtool/rest_api/services/shacl-1.3.2/bin/shaclinfer.sh", "-datafile", target])
-            file_object = open(target, 'a')
-            res = str(result,'utf-8')
-            file_object.write(res.strip())
-            file_object.close()
+        print(i+1, 'Cycle of inferencing')
+        #result = subprocess.check_output(["./reqman/apps/reqtool/rest_api/services/shacl-1.3.2/bin/shaclinfer.sh", "-datafile", target])
+        try:
+            result = subprocess.check_output("./reqman/apps/reqtool/rest_api/services/shacl-1.4.2/bin/shaclinfer.sh -datafile "+target+" | grep -v -e 'WARN  OntDocumentManager' -e 'at org.' -e 'org.apache.' -e '@'",shell=True)
+        except:
+            raise APIException("Problem during the Inferencing")
+        file_object = open(target, 'a')
+        res = str(result,'utf-8')
+        file_object.write(res.strip())
+        file_object.close()
     
     #need to fiil with all the metrics
     g = Graph()
+    gon = Graph()
     g.load(target, format="turtle")
+    gon.load(ontotlogy_file, format="turtle")
+    req_list=[]
     for inf_metr in list_of_inference_metrics:
         metrics_dict[inf_metr] = []
         p = URIRef("http://delab.csd.auth.gr/ontologies/2018/RDO#"+inf_metr)
         for s, p, o in g.triples((None, RDF.type, p)):
-            #metrics_dict["IncompleteRequirement"] = [s]
+            # e.g IncompleteRequirement': ['Req1', 'Req2']
             get_title = str(s).split("#")
+            if get_title[1] not in req_list:
+                req_list.append(get_title[1])
             metrics_dict[inf_metr].append(get_title[1])
-            for inf_metr2 in info_metric:
-                metrics_dict[inf_metr2] = []
-                p = URIRef("http://delab.csd.auth.gr/ontologies/2018/RDO#"+inf_metr2)
-                req_dict={}
-                req_dict['Comment'] = ""
-                for scom, pcom, ocom in g.triples((p, RDFS.comment, None)):
-                    req_dict['Comment'] = str(ocom)
-                req_dict[get_title[1]]=[]
-                for s1, p1, o1 in g.triples((s, p, None)):
-                    get_title2 = str(o1).split("#")
-                    req_dict[get_title[1]].append(get_title2[1])
-                metrics_dict[inf_metr2].append(req_dict)
-            print(metrics_dict)
+    
+    for inf_metr2 in info_metric:
+        #e.g isMissingOfInstance : ['Comment' : '...', {'Req1':['Instance1']}, {'Req2':['Instance2']}]
+        metrics_dict[inf_metr2] = []
+        p = URIRef("http://delab.csd.auth.gr/ontologies/2018/RDO#"+inf_metr2)
+        req_dict={}
+        req_dict['Comment'] = ""
+        for scom, pcom, ocom in g.triples((p, RDFS.comment, None)):
+            req_dict['Comment'] = str(ocom)
+        for get_title in  req_list:
+            req_dict[get_title]=[]
+            s = URIRef("http://delab.csd.auth.gr/ontologies/2018/RDO-instances#"+get_title)
+            p = URIRef("http://delab.csd.auth.gr/ontologies/2018/RDO#"+inf_metr2)
+            for s1, p1, o1 in g.triples((s, p, None)):
+                get_title2 = str(o1).split("#")
+                req_dict[get_title].append(get_title2[1])
+                req_dict[get_title2[1]]=[]
+                for s3, p3, o3 in gon.triples((None, None, o1)):
+                    sub=str(s3).split("#")
+                    ver=str(p3).split("#")
+                    obj=str(o3).split("#")
+                    req_dict[get_title2[1]].append(sub[1]+' '+ ver[1]+' '+ obj[1])
+                for s3, p3, o3 in gon.triples((o1, None, None)):
+                    sub=str(s3).split("#")
+                    ver=str(p3).split("#")
+                    obj=str(o3).split("#")
+                    req_dict[get_title2[1]].append('<i>'+sub[1]+'</i> <u>'+ ver[1]+'</u> <i>'+obj[1]+'</i>')
+
+        metrics_dict[inf_metr2].append(req_dict)
+    #print(metrics_dict)
     return(metrics_dict)
 
 

reqtool/reqman/api/reqman/apps/reqtool/rest_api/services/shacl-1.4.2/log4j2.properties

+## Licensed under the terms of http://www.apache.org/licenses/LICENSE-2.0
+
+status = error
+name = PropertiesConfig
+filters = threshold
+
+filter.threshold.type = ThresholdFilter
+filter.threshold.level = ALL
+
+appender.console.type = Console
+appender.console.name = STDOUT
+appender.console.layout.type = PatternLayout
+appender.console.layout.pattern = %d{HH:mm:ss} %-5p %-10c{1} :: %m%n
+#appender.console.layout.pattern = [%d{yyyy-MM-dd HH:mm:ss}] %-5p %-10c{1} :: %m%n
+
+rootLogger.level                  = INFO
+rootLogger.appenderRef.stdout.ref = STDOUT
+
+logger.jena.name  = org.apache.jena
+logger.jena.level = WARN
+
+logger.arq-info.name  = org.apache.jena.arq.info
+logger.arq-info.level = INFO
+
+logger.riot.name  = org.apache.jena.riot
+logger.riot.level = INFO

reqtool/reqman/api/reqman/apps/reqtool/rest_api/urls.py

@@ -35,6 +35,7 @@ urlpatterns = [
     #MAIN CHOICES DATA
     path('groupboilerplates/<int:groupboil>/main/choices/', main_req_views.MainChoicesViewSet.as_view(), name='mainchoices'),
     path('groupboilerplates/<int:groupboil>/main/choices/add/<str:instance>/<str:comment>/', main_req_views.MainChoicesAPIView.as_view(), name='setmainchoices'),
+    path('groupboilerplates/<int:groupboil>/main/choices/delete/<str:instance>/<str:comment>/', main_req_views.DeleteMainChoicesAPIView.as_view(), name='deletemainchoices'),
     path('main/choices/shall/', main_req_views.ShallChoicesViewSet.as_view(), name='mainshall'),
 
     #SUFFIX CHOICES DATA